Installation Instructions

For complete installation instructions, please follow the appropriate Software Installation Guide below.

Bionano Tools

v1.4.3
Bionano Tools v1.4.3October 23, 20192.4 GBDownload
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Please refer to the Bionano Tools Installation Guide (30182) for instructions.

Bionano Solve

v3.4.1
Bionano Solve v3.4.1October 23, 20192.5 GBDownload
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Before installing the latest version please review the Bionano Solve™ Software Installation Guide (30172) for system prerequisites and detailed instructions.

Bionano Access

v1.4.3
Bionano Access for Windows v1.4.3October 23, 2019250 MBDownload
Bionano Access for Linux/Mac v1.4.3October 23, 2019250 MBDownload
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Bionano Access web server installation.  Please refer to the Bionano Access Installation Guide (30170) for instructions.

Label Density Calculator

v1.0.0
Label Density Calculator v1.0.0October 30, 201939 MBDownload
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The Label Density Calculator predicts the expected label density from sequence FASTA files. This standalone PC version is useful when you do not yet have a version of Bionano Access installed as it will allow you to determine the ideal enzyme to use when labeling your sample.

Refer to document 30318 for the Bionano Label Density Calculator User Guide which has information on using the application. Document 30317 contains the Release Notes for this particular application.

IrysView

v2.5.1
IrysView v2.5.1July 18, 201625 MBDownload
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Before installing the latest version please review the IrysView® Software Installation Guide for system prerequisites and detailed instructions.

Windows Refaligner and Assembler

v5122
Windows Refaligner v5122July 18, 20161.5 MBDownload
Windows Assembler v5122July 18, 20161.2MBDownload
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Make sure to uninstall the current versions from Control Panel →Program and Features →Setup →RefAligner and WindowsAssembler. Accept the default installation path.

IrysSolve for Existing Hardware

(optional)

The alignment and assembly of medium to large genomes (> 200 Mbp) is recommended to be launched on an external Linux server. IrysView will launch assembly jobs externally when this option is chosen.

IrysSolve RefAligner and Assembler

Make sure to install files on the server at some parent ~ directory, e.g. home/username, or /home/users/username. Create ~/tools directory on server and extract files from v4704.zip file by OS version and CPU Accelerator type.

Determine Accelerator Type

AVXLinux4.7 MBDownload
SSELinux4.7 MBDownload
Xeon PhiLinux4.7 MBDownload
AcceleratorOSSizeFile

Use the command grep avx /proc/cpuinfo or grep sse2 /proc/cpuinfo and look for the word ‘avx’ or ‘sse2’. If both types exist, use AVX since it is faster than SSE2. Place the two extracted binaries in ~/tools directory and enable executable privilege on each of the two binaries. Create an empty ~/data directory.