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Data Analysis Documentation
Bionano Solve™ is an analysis pipeline for Bionano data processing, optimized for Bionano Compute and IrysSolve Compute Servers, whereas Bionano Tools contains various tools and scripts, including the Bionano Solve analysis pipeline. These tools together perform computation jobs on Saphyr and IrysSolve Compute Servers.
Below are documents required for installing and interpreting the data that is produced via the analysis pipeline.
The Report Guidelines documents give guidance for interpreting QC Reports, while the Theory of Operation documents explain the fundamentals of any given analysis method. The File Format Specification Sheets give detailed explanations of the different files utilized or produced by the pipeline.
Downloads
Protocols and Guides
- Bionano Tools Installation Guide - 30182
99 KB
Download - Bionano Solve Software Installation Guide - 30172
76 KB
Download - Data Collection Guidelines - 30173
98 KB
Download - Bionano Access Dashboard Guidelines - 30304
299 KB
Download - Molecule Quality Report Guidelines - 30223
141 KB
Download - Assembly Report Guidelines - 30255
135 KB
Download - Theory Of Operation – Structural Variant Calling - 30110
1,020 KB
Download - Theory of Operations - Hybrid Scaffolding - 30073
1 MB
Download - Hybrid Scaffold Guidelines - 30324
158 KB
Download - Theory of Operations - Copy Number Variation - 30210
264 KB
Download - Theory of Operation - Variant Annotation Pipeline - 30190
332 KB
Download - Theory of Operation - EnFocus FSHD Analysis - 30321
569 KB
Download - Running Bionano Solve Pipeline on Command Line - 30205
137 KB
Download - How to Align a bnx to a Reference - 30194
503 KB
Download
Brochures
- Bionano Tools v1.5 Release Notes - 30315
83 KB
Download - Bionano Solve v3.5 Release Notes - 30323
124 KB
Download - BNX File Format Specification Sheet - 30038
390 KB
Download - CMAP File Format Specification Sheet - 30039
270 KB
Download - BED File Format Specification Sheet -30164
51 KB
Download - SV Annotation Pipeline File Format Specification Sheet - 30168
81 KB
Download - SVMerge File Format Specification Sheet - 30165
242 KB
Download - XMAP File Format Specification Sheet - 30040
180 KB
Download - SMAP File Format Specification Sheet - 30041
127 KB
Download - EnFocus FSHD JSON FIle Format Specification Sheet - 30322
157 KB
Download - Hybrid Scaffold Conflict Cut Status File Format Specification Sheet - 30166
123 KB
Download
FAQs
There are currently no FAQs for this support item.
