- Home/
- Support/
- Data Analysis/
- Data Analysis Documentation
Data Analysis Documentation
Bionano Solve™ is an analysis pipeline for Bionano data processing, optimized for Bionano and Saphyr Compute Servers. These tools perform computation jobs for the Saphyr.
Below are documents required for installing and interpreting the data that is produced via the analysis pipeline.
The Report Guidelines documents give guidance for interpreting QC Reports, while the Theory of Operation documents explain the fundamentals of any given analysis method. The File Format Specification Sheets give detailed explanations of the different files utilized or produced by the pipeline.
Guidelines | |
|---|---|
| Data Collection - 30173, Rev D | 98 KB |
How much data to collect for a given application. | |
| Bionano Access Dashboard - 30304, Rev A | 299 KB |
Interpreting the Bionano Access Dashboard view for sample quality. | |
| Molecule Quality Report - 30223, Rev B | 141 KB |
Interpreting the Molecule Quality Report (MQR) in Bionano access for sample quality. | |
| De Novo Assembly Report - 30255, Rev C | 155 KB |
Interpreting the Assembly Report from Bionano Access once the molecules have been assembled into de novo maps. | |
| Hybrid Scaffold Report - 30324, Rev A | 156 KB |
Interpreting the Hybrid Scaffold Report when scaffolding Bionano maps with NGS contigs. | |
Installation Guide | |
|---|---|
| Bionano Solve Installation Guide - 30182, Rev L | 198 KB |
Release Notes | |
|---|---|
| Bionano Solve v3.6 Release Notes - 30380, Rev B | 80 KB |
Specification Sheet | |
|---|---|
| Hybrid Scaffold Conflict Cut Status File - 30166, Rev A | 123 KB |
| BNX File - 30038, Rev F | 367 KB |
| CMAP File - 30039, Rev G | 169 KB |
| BED File - 30164, Rev A | 51 KB |
| SV Annotation Pipeline File - 30168, Rev F | 90 KB |
| SVMerge File - 30165, Rev F | 248 KB |
| XMAP File - 30040, Rev B | 180 KB |
| SMAP File - 30041, Rev G | 215 KB |
| EnFocus FSHD JSON FIle - 30322, Rev A | 157 KB |
Theory of Operation | |
|---|---|
| Structural Variant Calling - 30110, Rev J | 2 MB |
| Variant Annotation Pipeline - 30190, Rev H | 371 KB |
| EnFocus FSHD Analysis - 30321, Rev B | 501 KB |
| Hybrid Scaffolding - 30073, Rev F | 745 KB |
User Guide | |
|---|---|
| How to Align a bnx to a Reference - 30194, Rev B | 503 KB |
| Running Bionano Solve Pipeline on Command Line - 30205, Rev G | 162 KB |
Analysis Quick Start | |
|---|---|
| Analysis Quick Start: Annotated Rare Variant Calling - 30375, Rev A | 2 MB |
