Data Analysis Documentation
Bionano Solve™ is an analysis pipeline for Bionano data processing, optimized for Bionano and Saphyr Compute Servers. These tools perform computation jobs for the Saphyr.
Below are documents required for installing and interpreting the data that is produced via the analysis pipeline.
The Report Guidelines documents give guidance for interpreting QC Reports, while the Theory of Operation documents explain the fundamentals of any given analysis method. The File Format Specification Sheets give detailed explanations of the different files utilized or produced by the pipeline.
Data Interpretation Guide
|Visualizing Different Classes of Structural Variants in Bionano Access Software – 30548, Rev A||7 MB|
|Data Collection - 30173, Rev E||268 KB|
How much data to collect for a given application.
|Bionano Access Dashboard and Chip Metrics - 30304, Rev B||299 KB|
Interpreting the Bionano Access Dashboard view for sample quality.
|Molecule Quality Report - 30223, Rev C||390 KB|
Interpreting the Molecule Quality Report (MQR) in Bionano access for sample quality.
|De Novo Assembly Informatics Report - 30255, Rev D||421 KB|
Interpreting the Assembly Report from Bionano Access once the molecules have been assembled into de novo maps.
|Hybrid Scaffold Report - 30324, Rev A||156 KB|
Interpreting the Hybrid Scaffold Report when scaffolding Bionano maps with NGS contigs.
|Bionano Solve Installation Guide - 30182, Rev L||198 KB|
|Bionano Solve v3.7.1 Release Notes - 30456, Rev B||193 KB|
Theory of Operation
|Structural Variant Calling - 30110, Rev L||7 MB|
|Variant Annotation Pipeline - 30190, Rev K||599 KB|
|EnFocus FSHD Analysis - 30321, Rev C||792 KB|
|EnFocus Fragile X Analysis - 30457, Rev A||649 KB|
|Hybrid Scaffolding - 30073, Rev F||745 KB|
|How to Align a bnx to a Reference - 30194, Rev B||503 KB|
|Running Bionano Solve Pipeline on Command Line - 30205, Rev H||383 KB|
Analysis Quick Start
|Analysis Quick Start: Annotated Rare Variant Calling - 30375, Rev A||2 MB|