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Data Analysis Documentation
Bionano Solve™ is an analysis pipeline for Bionano data processing, optimized for Bionano Compute and IrysSolve Compute Servers, whereas Bionano Tools contains various tools and scripts, including the Bionano Solve analysis pipeline. These tools together perform computation jobs on Saphyr and IrysSolve Compute Servers.
Below are documents required for installing and interpreting the data that is produced via the analysis pipeline.
The Report Guidelines documents give guidance for interpreting QC Reports, while the Theory of Operation documents explain the fundamentals of any given analysis method. The File Format Specification Sheets give detailed explanations of the different files utilized or produced by the pipeline.
Downloads
Protocols and Guides
- Bionano Tools Installation Guide - 30182, Rev J
99 KB
Download - Bionano Solve Software Installation Guide - 30172, Rev L
76 KB
Download - Data Collection Guidelines - 30173, Rev C
98 KB
Download - Bionano Access Dashboard Guidelines - 30304, Rev A
299 KB
Download - Molecule Quality Report Guidelines - 30223, Rev B
141 KB
Download - Assembly Report Guidelines - 30255, Rev C
135 KB
Download - Theory Of Operation – Structural Variant Calling - 30110, Rev G
1,020 KB
Download - Theory of Operations - Hybrid Scaffolding - 30073, Rev E
1 MB
Download - Hybrid Scaffold Guidelines - 30324, Rev A
158 KB
Download - Theory of Operations - Copy Number Variation - 30210, Rev D
264 KB
Download - Theory of Operation - Variant Annotation Pipeline - 30190, Rev F
332 KB
Download - Theory of Operation - EnFocus FSHD Analysis - 30321, Rev A
569 KB
Download - Running Bionano Solve Pipeline on Command Line - 30205, Rev F
137 KB
Download - How to Align a bnx to a Reference - 30194, Rev B
503 KB
Download
Brochures
- Bionano Tools v1.5 Release Notes - 30315
83 KB
Download - Bionano Solve v3.5 Release Notes - 30323
124 KB
Download - BNX File Format Specification Sheet - 30038, Rev E
390 KB
Download - CMAP File Format Specification Sheet - 30039, Rev F
270 KB
Download - BED File Format Specification Sheet -30164, Rev A
51 KB
Download - SV Annotation Pipeline File Format Specification Sheet - 30168, Rev E
81 KB
Download - SVMerge File Format Specification Sheet - 30165, Rev F
242 KB
Download - XMAP File Format Specification Sheet - 30040, Rev B
180 KB
Download - SMAP File Format Specification Sheet - 30041, Rev F
127 KB
Download - EnFocus FSHD JSON FIle Format Specification Sheet - 30322, Rev A
157 KB
Download - Hybrid Scaffold Conflict Cut Status File Format Specification Sheet - 30166, Rev A
123 KB
Download
FAQs
There are currently no FAQs for this support item.
