Datasets

Next-Generation Mapping performed on the BioNano Genomics Irys® System is enabling researchers worldwide to more fully and accurately characterize the human genome. This website is your resource, providing links to new mapping data, de-novo assemblies, and annotations of genomic variation.

We provide these datasets to enable the community to better understand and interact with NGM data. The datasets are designed to be used with IrysView® 2.3 and above. For instructions on downloading and installing the latest versions of IrysView as well as importing data, please see the IrysView Installation and Training Guide.

Each download contains a compressed folder that can be uncompressed using WinRAR or 7-Zip. The uncompressed folder contains an “output” folder that can be imported into IrysView.

Hybrid Scaffold (IrysView 2.4) Training Data Set

Name Date Size Dataset
NA12878 and Hummingbird (2-step)April 12, 20161 GBDownload

The zip file in this directory contains the essential files needed to run the hybrid scaffold pipeline using IrysView 2.4and IrysSolve 2.0

YH

Name Date Size Dataset
YH1December 1, 20141 GBDownload

YH genome assembled and aligned against hg19 using IrysView 2.3, pipeline scripts v4125, and tools v4088

1Cao, H., et al. Rapid Detection of Structural Variation in a Human Genome using Nanochannel-based Genome Mapping Technology. Giga Science (2014); 3(December 2014): 34

Ashkenazi Trio

Name Date Size Dataset
NA24385 (Son)1October 1, 20141.72 GBDownload
NA24149 (Father)1December 1, 20141.92GBDownload
NA24143 (Mother)1December 1, 20141.75GBDownload

Ashkenazi Father-Mother-Son trio from Personal Genome Project assembled and aligned against hg19 using IrysView 2.3, pipeline scripts v4125, and tools v4088

1 Zook, J., et al. Extensive sequencing of seven human genomes to characterize benchmark reference materials. BioRxiv (2015)

CEPH Trio

Name Date Size Dataset
NA12878 (Daughter)1July 1, 20141.72GBDownload

CEPH pedigree 1463 Father-Mother-Daughter trio assembled and aligned against hg19 using IrysView 2.3, pipeline scripts v4125, and tools v4088

1Pendleton, M., Sebra, R., et al. Assembly and diploid architecture of an individual human genome via single-molecule technologies. Nature Methods (2015); e3454

2Mak AC et al., Genome-Wide Structural Variation Detection by Genome Mapping on Nanochannel Arrays Genetics (2015)

Han Chinese Son

Name Date Size Dataset
NA24631 (Son)1March 1, 20141.2 GBDownload

Han Chinese Son from Personal Genome Project assembled and aligned against hg19 using IrysView 2.3, pipeline scripts v4125, and tools v4088

1Zook, J., et al. Extensive sequencing of seven human genomes to characterize benchmark reference materials. BioRxiv (2015)

If you have questions contact us at:

Please note that while Public Datasets are freely available, Bionano Genomics does not offer technical support regarding interpretation of results for these resources. Please cite this website and Bionano Genomics, Inc, or the appropriate publication, in publications and other public usage of Bionano Genomics Public Datasets.

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